# cmsearch :: search CM(s) against a sequence database
# INFERNAL 1.1.4 (Dec 2020)
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query CM file:                         RF00061.cm
# target sequence database:              GCA_000146045.2.fasta
# tabular output of hits:                cmsearch_114_IRES_Yeast.tbl
# sequence reporting threshold:          score >= 298.2
# number of worker threads:              56
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       IRES_HCV  [CLEN=352]
Accession:   RF00061
Description: Hepatitis C virus internal ribosome entry site
Hit scores:
 rank     E-value  score  bias  sequence  start    end   mdl trunc   gc  description
 ----   --------- ------ -----  -------- ------ ------   --- ----- ----  -----------

   [No hits detected that satisfy reporting thresholds]


Hit alignments:

   [No hits detected that satisfy reporting thresholds]


Internal CM pipeline statistics summary:
----------------------------------------
Query model(s):                                                  1  (352 consensus positions)
Target sequences:                                               16  (24142652 residues searched)
Target sequences re-searched for truncated hits:                16  (28160 residues re-searched)
Windows   passing  local HMM SSV           filter:            6432  (0.1374); expected (0.35)
Windows   passing  local HMM Viterbi       filter:            1631  (0.03555); expected (0.15)
Windows   passing  local HMM Viterbi  bias filter:            1607  (0.03502); expected (0.15)
Windows   passing  local HMM Forward       filter:               9  (0.0001992); expected (0.003)
Windows   passing  local HMM Forward  bias filter:               9  (0.0001992); expected (0.003)
Windows   passing glocal HMM Forward       filter:               1  (2.16e-05); expected (0.003)
Windows   passing glocal HMM Forward  bias filter:               1  (2.16e-05); expected (0.003)
Envelopes passing glocal HMM envelope defn filter:               1  (1.705e-05); expected (0.003)
Envelopes passing  local CM  CYK           filter:               0  (0); expected (0.0001)
Total CM hits reported:                                          0  (0); includes 0 truncated hit(s)

# CPU time: 3.93u 0.19s 00:00:04.12 Elapsed: 00:00:00.86
//
[ok]
