Uses of Class
org.snpsift.annotate.QueryResult
Packages that use QueryResult
-
Uses of QueryResult in org.snpsift.annotate
Methods in org.snpsift.annotate with parameters of type QueryResultModifier and TypeMethodDescriptionprotected booleanAnnotateVcfDb.findDbExists(QueryResult qr) Should we annotate using 'exists' field?protected voidAnnotateVcfDb.findDbId(Set<String> idSet, QueryResult qr) Find an ID for this variant and add them to idSetprotected StringAnnotateVcfDb.findDbInfo(String infoFieldName, QueryResult qr) Find all non-empty INFO fields 'infoFieldName' in resultsprotected voidAnnotateVcfDb.findDbInfo(Map<String, String> info, QueryResult qr) Find INFO fields for this VCF entryprotected StringAnnotateVcfDb.findDbInfoAlt(String infoFieldName, QueryResult qr) Find the first non-empty INFO field 'infoFieldName' in results Note: ALT must match