FieldNmd (SnpSift 5.2 API)

java.lang.Object

org.snpsift.lang.expression.Expression

org.snpsift.lang.expression.Field

org.snpsift.lang.expression.FieldSub

org.snpsift.lang.expression.FieldLof

org.snpsift.lang.expression.FieldNmd

public class FieldNmd extends FieldLof

A NMD field form SnpEff: E.g.: 'NMD[2].GENE'

Author:: pablocingolani

Field Summary

Fields inherited from class org.snpsift.lang.expression.Field
exceptionIfNotFound, name, number, returnType, TYPE_ALL, TYPE_ANY, vcfInfo, vcfInfoNumber

Fields inherited from class org.snpsift.lang.expression.Expression
debug, negated, operator
Constructor Summary

Constructors

Constructor

Description

FieldNmd(String name, Expression indexExpr)
Method Summary

Modifier and Type

Method

Description

protected void

init()

Methods inherited from class org.snpsift.lang.expression.FieldLof
getFieldString, getName, getReturnType, toString

Methods inherited from class org.snpsift.lang.expression.FieldSub
evalIndex, evalIndex, evalIndex, evalIndex, getFieldString, isSub

Methods inherited from class org.snpsift.lang.expression.Field
eval, eval, fieldHeaderNotFound, fieldNotFound, getReturnType, getSampleNum, gtFieldNotFound, indexStr, isSampleName, returnType, returnType, setExceptionIfNotFound

Methods inherited from class org.snpsift.lang.expression.Expression
setNegated

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- FieldNmd
  
  public FieldNmd(String name, Expression indexExpr)
Method Details
- init
  
  protected void init()
  
  Overrides:
  
  init in class FieldLof