Package org.snpsift.util

Class RandomUtil

java.lang.Object
org.snpsift.util.RandomUtil
public class RandomUtil extends Object

  • Field Details

    • ACGT

      public static final String[] ACGT

    • SHORT_VARIANT_LEN

      public static final int SHORT_VARIANT_LEN
      See Also:

  • Constructor Details

    • RandomUtil

      public RandomUtil()

    • RandomUtil

      public RandomUtil(int seed)

  • Method Details

    • reset

      public void reset()

    • rand

      public double rand()

    • randAcgt

      public String randAcgt()

    • randBase

      public String randBase(String notBase)

    • randBases

      public String randBases(int len)

    • randBases

      public String randBases(int len, String notBases)

    • randBool

      public boolean randBool()

    • randBoolOrNull

      public Boolean randBoolOrNull()

    • randChar

      public char randChar()

    • randCharOrNull

      public Character randCharOrNull()

    • randDouble

      public double randDouble(double maxDouble)

    • randDoubleOrNull

      public Double randDoubleOrNull()

    • randEnum

      public String randEnum(ArrayList<String> enumStrings)

    • randEnumOrNull

      public String randEnumOrNull(ArrayList<String> enumStrings)

    • randInt

      public int randInt()

    • randInt

      public int randInt(int maxInt)

    • randIntOrNull

      public Integer randIntOrNull()

    • randIntOrNull

      public Integer randIntOrNull(int maxInt)

    • randLong

      public long randLong()

    • randLong

      public long randLong(long maxLong)

    • randLongOrNull

      public Long randLongOrNull()

    • randLongOrNull

      public Long randLongOrNull(long maxLong)

    • randString

      public String randString(int maxLen)

    • randStringOrNull

      public String randStringOrNull()

    • randStringOrNull

      public String randStringOrNull(int maxLen)

    • randVariant

      public org.snpeff.util.Tuple<String,String> randVariant(VariantCategory variantCategory)

    • randVariantAlt

      public String randVariantAlt(VariantCategory variantCategory, String ref)

    • randVariantRef

      public String randVariantRef(VariantCategory variantCategory)

    • setNullRatio

      public void setNullRatio(double nullRatio)

    • setSeed

      public void setSeed(long seed)

    • setRand

      public void setRand(Random rand)